Gene: Sopen12g006810

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g006810
  • Transcript Identifier Sopen12g006810.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 5289647-5290060 : negative

Gene Family Information

  • ID HOM05D000437
  • #Genes/#Species 1181/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g006810.1

Descriptions

  • Description Histone H2B - Gossypium hirsutum (Upland cotton), Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. | histone B2 (HTB2) | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleolus, nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2B , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: Histone superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G22880

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
InterPronucleosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G22880
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G22880

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009072 Histone-fold
IPR000558 Histone H2B
IPR007125 Histone H2A/H2B/H3
Mapman id Description
12.1.1.2 Chromatin organisation.chromatin structure.DNA wrapping.histone (H2B)