Gene: Sopen12g001810

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g001810
  • Transcript Identifier Sopen12g001810.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 585852-593831 : negative

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g001810.1

Descriptions

  • Description Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) - Cucurbita maxima (Pumpkin) (Winter squash), Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5 UTR of CSD2 in vitro. ACO3 is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | aconitase 3 (ACO3) | FUNCTIONS IN: aconitate hydratase activity, copper ion binding, ATP binding | INVOLVED IN: in 6 processes | LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane, chloroplast | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha , Aconitase family, 4Fe-4S cluster binding site , Aconitase A/isopropylmalate dehydratase small subunit, swivel , Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 , Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase , Aconitase-like core , Aconitase/3-isopropylmalate dehydratase, swivel , Aconitase/iron regulatory protein 2 , Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 | BEST Arabidopsis thaliana protein match is: aconitase 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990641
ISO
PLAZA Integrative Orthologyresponse to iron ion starvation AT4G35830
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT2G05710
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT2G05710
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G05710
GO:0006102
ISO
PLAZA Integrative Orthologyisocitrate metabolic process AT4G35830
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT2G05710
GO:0006101
ISO
PLAZA Integrative Orthologycitrate metabolic process AT4G35830

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT4G35830
GO:0048027
ISO
PLAZA Integrative OrthologymRNA 5'-UTR binding AT4G35830
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G05710
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT2G05710
GO:0003994
ISO
PLAZA Integrative Orthologyaconitate hydratase activity AT4G35830

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G35830
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT2G05710
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT4G35830
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G35830
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G05710
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G35830
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G05710
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT2G05710
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT4G35830
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT4G35830
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT2G05710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006249 Aconitase/Iron-responsive element-binding protein 2
IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
IPR044137 Aconitase A, swivel domain
IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain
IPR036008 Aconitase, iron-sulfur domain
IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel
IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
Mapman id Description
2.3.2 Cellular respiration.tricarboxylic acid cycle.aconitase
5.7.3.6.2 Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.aconitase