Gene: Sopen12g001250

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g001250
  • Transcript Identifier Sopen12g001250.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 219043-219611 : negative

Gene Family Information

  • ID HOM05D000221
  • #Genes/#Species 1858/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g001250.1

Descriptions

  • Description Encodes HTA13, a histone H2A protein. | histone H2A 13 (HTA13) | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus, nucleosome | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: histone H2A 10
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT5G54640
GO:0009617
ISO
PLAZA Integrative Orthologyresponse to bacterium AT5G54640
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT5G54640

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G54640

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
InterPronucleosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G27230
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G54640

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002119 Histone H2A
IPR007125 Histone H2A/H2B/H3
IPR009072 Histone-fold
IPR032454 Histone H2A, C-terminal domain
Mapman id Description
12.1.1.1 Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A)