Gene: Sopen11g030190

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g030190
  • Transcript Identifier Sopen11g030190.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 65587653-65591612 : positive

Gene Family Information

  • ID HOM05D002236
  • #Genes/#Species 301/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g030190.1

Descriptions

  • Description This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | Transducin/WD40 repeat-like superfamily protein | FUNCTIONS IN: protein binding, nucleotide binding | INVOLVED IN: biological_process unknown | LOCATED IN: CUL4 RING ubiquitin ligase complex | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , WD40 repeat 2 , WD40-repeat-containing domain , WD40 repeat , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein ., WD40/YVTN repeat-like-containing domain
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080008
ISO
PLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complex AT3G45620

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR045151 DDB1- and CUL4-associated factor 8-like
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
19.2.2.8.3.4.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.substrate adaptor (ABD1)