Gene: Sopen11g028920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g028920
  • Transcript Identifier Sopen11g028920.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 64594032-64596771 : negative

Gene Family Information

  • ID HOM05D001631
  • #Genes/#Species 395/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g028920.1

Descriptions

  • Description Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog) | AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. | IRREGULAR XYLEM 9-LIKE (IRX9-L) | CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 | BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045492
ISO
PLAZA Integrative Orthologyxylan biosynthetic process Os01g0675500
GO:0010417
ISO
PLAZA Integrative Orthologyglucuronoxylan biosynthetic process AT2G37090
GO:0010413
ISO
PLAZA Integrative Orthologyglucuronoxylan metabolic process AT2G37090
GO:0009834
ISO
PLAZA Integrative Orthologyplant-type secondary cell wall biogenesis AT2G37090

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015018
IEA
InterProgalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
GO:0042285
ISO
PLAZA Integrative Orthologyxylosyltransferase activity AT2G37090

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
InterPromembrane
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT2G37090
GO:0000139
ISO
PLAZA Integrative OrthologyGolgi membrane Os05g0123100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005027 Glycosyl transferase, family 43
IPR029044 Nucleotide-diphospho-sugar transferases
Mapman id Description
21.2.2.1.3.1 Cell wall organisation.hemicellulose.xylan.biosynthesis.xylosyltransferase activities.xylosyltransferase (IRX9)