Gene: Sopen11g022730

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g022730
  • Transcript Identifier Sopen11g022730.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 54173236-54188677 : negative

Gene Family Information

  • ID HOM05D000221
  • #Genes/#Species 1858/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g022730.1

Descriptions

  • Description Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein. | RESISTANT TO AGROBACTERIUM TRANSFORMATION 5 (RAT5) | FUNCTIONS IN: DNA binding | INVOLVED IN: DNA mediated transformation, response to bacterium, response to wounding | LOCATED IN: nucleolus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: histone H2A 2
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0046982
IEA
InterProprotein heterodimerization activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
InterPronucleosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032454 Histone H2A, C-terminal domain
IPR002119 Histone H2A
IPR007125 Histone H2A/H2B/H3
IPR009072 Histone-fold
Mapman id Description
12.1.1.1 Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A)