Gene: Sopen11g020260

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g020260
  • Transcript Identifier Sopen11g020260.2
  • Gene Type Coding gene
  • Location Spenn-ch11 : 46459291-46463135 : negative

Gene Family Information

  • ID HOM05D002811
  • #Genes/#Species 246/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g020260.2

Descriptions

  • Description Encodes WHY2, a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus. WHY2 is a member of the Whirly family proteins present mainly in the plant kingdom performing various activities related to DNA metabolism. Crystal structure of Solanum tuberosum WHY2, a close homolog of Arabidopsis WHY2, reveal that Whirly proteins bind to single strand DNA to promote accurate repair of DNA double-strand breaks over an error-prone repair pathway. | WHIRLY 2 (ATWHY2) | CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator , Plant transcription factor | BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006952
IEA
InterProdefense response
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G71260
GO:0045910
ISO
PLAZA Integrative Orthologynegative regulation of DNA recombination Zm00001eb270470

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003697
IEA
InterProsingle-stranded DNA binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding Zm00001eb270470
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G71260
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G71260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma Zm00001eb270470
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G71260
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G71260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009044 ssDNA-binding transcriptional regulator
IPR013742 Whirly transcription factor
Mapman id Description
13.5.7.1 Cell cycle organisation.organellar DNA replication.DNA recombination.recombination mediator (Whirly)