Gene: Sopen11g015760

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g015760
  • Transcript Identifier Sopen11g015760.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 29878095-29883760 : negative

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g015760.1

Descriptions

  • Description Eukaryotic initiation factor 4A-3 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | eukaryotic initiation factor 4A-III (EIF4A-III) | FUNCTIONS IN: protein binding, ATP-dependent helicase activity | INVOLVED IN: mRNA processing, response to hypoxia | LOCATED IN: in 6 components | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001666
ISO
PLAZA Integrative Orthologyresponse to hypoxia AT3G19760
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT3G19760

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G19760
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G19760

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G19760
GO:0035145
ISO
PLAZA Integrative Orthologyexon-exon junction complex AT3G19760
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G19760
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G19760
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT3G19760

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
17.3.1.1.1 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.helicase component eIF4A3