Gene: AT3G19760

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G19760
  • Transcript Identifier AT3G19760.1
  • Gene Type Coding gene
  • Location Chr3 : 6863790-6866242 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G19760.1
  • symbol EIF4A-III
  • Alias RH2
  • uniprot Q94A52

Descriptions

  • Description eukaryotic initiation factor 4A-III
  • Computational description eukaryotic initiation factor 4A-III (EIF4A-III); FUNCTIONS IN: protein binding, ATP-dependent helicase activity; INVOLVED IN: mRNA processing, response to hypoxia; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G51380.1); Has 50040 Blast hits to 49280 proteins in 3163 species: Archae - 836; Bacteria - 27183; Metazoa - 6400; Fungi - 4843; Plants - 2693; Viruses - 42; Other Eukaryotes - 8043 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IPI
Gene OntologymRNA processing1
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001666
IDA
Gene Ontologyresponse to hypoxia1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IBA
Gene OntologyRNA helicase activity2
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding2 3 4
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA, HDA
IBA
Gene Ontologynucleolus1 2 5
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus6
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005654
IDA
Gene Ontologynucleoplasm1
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
Gene Ontologynuclear speck1
GO:0035145
IDA
Gene Ontologyexon-exon junction complex1
GO:0005829
HDA
Gene Ontologycytosol7
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
17.3.1.1.1 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.helicase component eIF4A3