Gene: Sopen11g003790
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g003790
- Transcript Identifier Sopen11g003790.1
- Gene Type Coding gene
- Location Spenn-ch11 : 2301839-2302273 : negative
Gene Family Information
- ID HOM05D000437
- #Genes/#Species 1181/100
- Phylogenetic origin
- ID ORTHO05D000324
- #Genes/#Species 1111/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g003790.1
Descriptions
- Description Histone H2B - Gossypium hirsutum (Upland cotton), HTB4 | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleolus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2B , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: Histone superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT5G59910 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G46030 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | AT5G59910 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G59910 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.2 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2B) |