Gene: Sopen10g033630
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g033630
- Transcript Identifier Sopen10g033630.1
- Gene Type Coding gene
- Location Spenn-ch10 : 80767278-80769470 : negative
Gene Family Information
- ID HOM05D000179
- #Genes/#Species 2119/97
- Phylogenetic origin
- ID ORTHO05D000107
- #Genes/#Species 2044/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen10g033630.1
Descriptions
- Description JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect. | JACKDAW (JKD) | FUNCTIONS IN: protein binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding | INVOLVED IN: regulation of epidermal cell differentiation, regulation of meristem growth, regulation of cell division, root development, regulation of transcription | LOCATED IN: intracellular | EXPRESSED IN: 6 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like , Zinc finger, C2H2-type , Zinc finger, double-stranded RNA binding | BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0010075 | ISO | PLAZA Integrative Orthology | regulation of meristem growth | AT5G03150 |
GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT5G03150 |
GO:0008356 | ISO | PLAZA Integrative Orthology | asymmetric cell division | AT5G03150 |
GO:0045604 | ISO | PLAZA Integrative Orthology | regulation of epidermal cell differentiation | AT5G03150 |
GO:0048364 | ISO | PLAZA Integrative Orthology | root development | AT5G03150 |
GO:0051302 | ISO | PLAZA Integrative Orthology | regulation of cell division | AT5G03150 |
GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT5G03150 |
GO:0034504 | ISO | PLAZA Integrative Orthology | protein localization to nucleus | AT5G03150 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT5G03150 |
GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT5G03150 |
GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT5G03150 |
GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT5G03150 |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G03150 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G03150 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
15.5.15 | RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) |