Gene: AT5G03150

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G03150
  • Transcript Identifier AT5G03150.1
  • Gene Type Coding gene
  • Location Chr5 : 745849-748678 : positive

Gene Family Information

  • ID HOM05D000179
  • #Genes/#Species 2119/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G03150.1
  • symbol JKD
  • full_name JACKDAW
  • uniprot Q700D2

Descriptions

  • Description C2H2-like zinc finger protein
  • Computational description JACKDAW (JKD); FUNCTIONS IN: protein binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of epidermal cell differentiation, regulation of meristem growth, regulation of cell division, root development, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G66730.1); Has 56579 Blast hits to 20803 proteins in 357 species: Archae - 0; Bacteria - 66; Metazoa - 49427; Fungi - 692; Plants - 856; Viruses - 6; Other Eukaryotes - 5532 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048364
IMP, IGI
Gene Ontologyroot development1 2
GO:0008356
IMP
Gene Ontologyasymmetric cell division2
GO:0034504
IMP
Gene Ontologyprotein localization to nucleus3
GO:0045893
IDA
Gene Ontologypositive regulation of transcription, DNA-templated4
GO:0045604
IMP
Gene Ontologyregulation of epidermal cell differentiation5
GO:0051302
IMP
Gene Ontologyregulation of cell division1
GO:0010075
IMP
Gene Ontologyregulation of meristem growth1
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding4
GO:0003677
IDA
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003700
IDA
ISS, IBA
Gene OntologyDNA-binding transcription factor activity4 6 7
GO:0042803
IPI
Gene Ontologyprotein homodimerization activity1
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus4 7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013087 Zinc finger C2H2-type
IPR036236 Zinc finger C2H2 superfamily
Mapman id Description
15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)