Gene: Sopen10g031450

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g031450
  • Transcript Identifier Sopen10g031450.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 79001670-79003332 : negative

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g031450.1

Descriptions

  • Description Tubulin beta-1 chain (Beta-1 tubulin) - Oryza sativa (Rice), Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. | beta-6 tubulin (TUB6) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: microtubule-based process, response to salt stress, response to cold | LOCATED IN: microtubule cytoskeleton, plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Beta tubulin , Tubulin , Tubulin/FtsZ, GTPase domain , Tubulin/FtsZ, N-terminal , Tubulin/FtsZ, C-terminal , Beta tubulin, autoregulation binding site , Tubulin, conserved site , Tubulin/FtsZ, 2-layer sandwich domain | BEST Arabidopsis thaliana protein match is: tubulin beta chain 3
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007017
IEA
InterPromicrotubule-based process
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G12250

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
InterProGTPase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G12250

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005874
IEA
InterPromicrotubule
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G12250

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR037103 Tubulin/FtsZ-like, C-terminal domain
IPR002453 Beta tubulin
IPR023123 Tubulin, C-terminal
IPR003008 Tubulin/FtsZ, GTPase domain
IPR000217 Tubulin
IPR008280 Tubulin/FtsZ, C-terminal
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin