Gene: Sopen10g029530

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g029530
  • Transcript Identifier Sopen10g029530.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 77321383-77325000 : negative

Gene Family Information

  • ID HOM05D000043
  • #Genes/#Species 4839/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g029530.1

Descriptions

  • Description Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff, Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes. | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: plant-type cell wall modification, pectin biosynthetic process, cellulose biosynthetic process, secondary cell wall biogenesis | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant | BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009827
ISO
PLAZA Integrative Orthologyplant-type cell wall modification AT5G06700
GO:0045489
ISO
PLAZA Integrative Orthologypectin biosynthetic process AT5G06700
GO:0030244
ISO
PLAZA Integrative Orthologycellulose biosynthetic process AT5G06700
GO:0009834
ISO
PLAZA Integrative Orthologyplant-type secondary cell wall biogenesis AT5G06700

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005802
ISO
PLAZA Integrative Orthologytrans-Golgi network AT5G06700
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT5G06700
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT5G06700

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029962 Trichome birefringence-like family
IPR026057 PC-Esterase
IPR025846 PMR5 N-terminal domain
Mapman id Description
35.1 not assigned.annotated