Gene: Sopen10g022210

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g022210
  • Transcript Identifier Sopen10g022210.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 61955155-61988104 : negative

Gene Family Information

  • ID HOM05D004811
  • #Genes/#Species 153/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g022210.1

Descriptions

  • Description Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. RNA 3, #8242, -endñprocessing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC. | CSTF77 | FUNCTIONS IN: protein binding, mRNA binding, transcription repressor activity | INVOLVED IN: RNA 3-end processing, mRNA processing, embryo sac development | LOCATED IN: intracellular, nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix , Tetratricopeptide-like helical , Tetratricopeptide repeat-containing , Tetratricopeptide repeat , Suppressor of forked | BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0042868
ISO
PLAZA Integrative Orthologyantisense RNA metabolic process AT1G17760
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT1G17760
GO:0031123
ISO
PLAZA Integrative OrthologyRNA 3'-end processing AT1G17760
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA AT1G17760
GO:0060968
ISO
PLAZA Integrative Orthologyregulation of gene silencing AT1G17760

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G17760

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR003107 HAT (Half-A-TPR) repeat
IPR008847 Suppressor of forked
Mapman id Description
16.3.1.3.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF77/Rna14