Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1458.7 742 100.0
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1446.4 742 98.7
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 0.0e+00 1301.2 741 89.6
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 0.0e+00 1243.0 740 86.9
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1164.1 758 77.8
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1162.1 772 76.8
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1157.9 754 77.6
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1155.6 742 78.0
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1149.0 763 76.4
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1149.0 759 77.1
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1138.3 757 76.2
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1133.6 723 79.0
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 0.0e+00 1132.1 741 76.8
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1131.7 767 76.3
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1131.3 763 75.1
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1119.8 761 74.9
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1109.7 754 74.5
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1105.9 762 74.5
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1100.1 770 73.0
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1098.6 756 73.9
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1097.0 758 74.0
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1094.3 754 74.1
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1091.3 762 75.1
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1085.9 764 72.8
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1084.3 764 72.8
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1084.3 767 73.3
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1084.3 754 73.7
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1083.2 762 72.8
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1082.8 756 73.4
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1082.4 762 73.0
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1078.5 754 72.1
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1077.8 756 73.3
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1075.1 750 73.6
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 5.1e-312 1073.5 760 72.0
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.0e-311 1072.0 752 72.3
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 1.0e-310 1069.7 751 71.6
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 2.2e-310 1068.5 769 71.1
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 5.0e-310 1067.4 761 71.6
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.1e-309 1066.2 769 71.0
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 9.5e-309 1063.1 779 70.5
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 3.6e-308 1061.2 753 71.0
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 1.4e-307 1059.3 759 71.7
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 1.8e-307 1058.9 761 71.4
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 5.7e-306 1053.9 758 70.7
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.7e-305 1052.4 754 72.0
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 3.7e-305 1051.2 741 72.5
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 3.1e-304 1048.1 760 70.8
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.0e-303 1045.4 775 70.5
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 3.5e-303 1044.6 762 70.7
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 4.5e-303 1044.3 751 69.5
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 6.6e-302 1040.4 756 70.8
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 3.3e-301 1038.1 771 70.4
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.0e-299 1033.1 754 70.0
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 2.6e-298 1028.5 763 70.6
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.6e-298 1028.5 803 68.4
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 9.8e-298 1026.5 763 70.5
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 9.8e-298 1026.5 769 68.9
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 1.8e-296 1022.3 758 71.2
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 1.7e-294 1015.8 765 69.0
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 1.6e-292 1009.2 755 68.5
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.1e-292 1008.8 765 69.4
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 4.0e-291 1004.6 753 69.1
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 5.8e-290 1000.7 772 68.1
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 2.7e-287 991.9 766 68.1
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 4.1e-280 968.0 750 65.9
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 4.1e-280 968.0 750 66.1
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.3e-278 963.0 750 65.9
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 8.6e-278 960.3 750 65.2
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 4.3e-277 958.0 757 64.7
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 3.1e-275 951.8 759 64.0
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.2e-274 949.9 741 66.0
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 1.7e-273 946.0 755 65.3
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 2.9e-273 945.3 755 64.0
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 2.9e-273 945.3 755 64.0
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 3.8e-273 944.9 758 65.2
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 2.1e-271 939.1 783 62.1
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 4.6e-271 937.9 752 64.9
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 3.9e-270 934.9 510 87.1
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 5.1e-270 934.5 510 86.9
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 4.3e-269 931.4 922 56.0
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 3.1e-267 925.2 751 63.2
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 3.4e-266 921.8 762 64.2
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 8.4e-265 917.1 749 64.8
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 9.3e-264 913.7 676 69.5
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.2e-263 913.3 752 62.6
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 1.3e-262 909.8 721 63.4
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.1e-261 906.7 510 85.3
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 1.6e-252 876.3 672 66.5
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.5e-250 868.2 748 61.4
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.2e-247 860.1 632 71.2
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.9e-246 855.1 754 62.7
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.1e-244 849.4 765 60.3
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 6.5e-241 837.8 753 59.9
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 6.0e-239 831.2 631 68.1
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 3.0e-238 828.9 739 59.5
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 4.6e-231 805.1 811 53.3
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.4e-230 803.5 765 56.7
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.1e-223 779.6 441 91.4
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.7e-220 770.0 839 49.5
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 6.7e-214 748.0 745 51.4
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 8.0e-207 724.5 744 55.5
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.7e-204 716.8 746 53.8
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.2e-197 694.1 743 51.7
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.4e-197 692.6 736 52.0
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 5.9e-194 681.8 744 49.5
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.9e-194 681.8 743 51.0
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.0e-193 681.0 775 48.0
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.8e-193 679.1 736 51.2
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 6.6e-169 598.6 334 83.5
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.4e-131 474.6 410 59.8
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.4e-123 448.0 446 55.4
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 1.3e-121 441.4 352 71.3
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 2.8e-111 407.1 240 86.2
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.4e-105 388.3 217 84.3
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 1.8e-97 361.3 182 97.3
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 1.7e-92 344.7 681 33.5
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 1.1e-91 342.0 716 32.3
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 2.4e-78 297.7 703 31.0
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.6e-66 258.5 130 95.4
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 2.7e-61 241.1 280 52.9
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.1e-58 231.5 167 68.9
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 3.1e-57 227.6 242 57.4
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 1.2e-56 225.7 242 57.0
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.9e-52 210.7 121 85.1
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.2e-48 199.1 126 77.0
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 7.6e-48 196.4 109 83.5
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 2.8e-42 177.9 214 51.4
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 8.1e-34 149.8 187 51.3
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 6.0e-29 133.7 101 66.3
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 5.1e-28 130.6 141 48.9
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.1e-25 122.9 172 48.8
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.2e-24 119.4 125 60.0
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 5.6e-19 100.5 62 77.4
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 8.1e-18 96.7 55 78.2
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 4.0e-17 94.4 66 69.7
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.3e-15 89.4 506 20.9
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 2.9e-15 88.2 148 41.2
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 8.7e-12 76.6 466 21.2
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 9.6e-11 73.2 511 20.9
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 2.8e-10 71.6 347 22.8
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 4.8e-10 70.9 492 21.5
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 1.8e-09 68.9 59 57.6
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.8e-09 68.9 495 20.4
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 7.6e-08 63.5 639 21.1


User provided reference genes

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