Gene: Sopen09g034980

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g034980
  • Transcript Identifier Sopen09g034980.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 82965701-82966350 : positive

Gene Family Information

  • ID HOM05D006427
  • #Genes/#Species 124/80
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g034980.1

Descriptions

  • Description transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. | CCR-like (CCL) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Light regulated Lir1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071482
ISO
PLAZA Integrative Orthologycellular response to light stimulus Os01g0102900
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT3G26740

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G26740

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
InterProchloroplast
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma Os01g0102900
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope Os01g0102900
GO:0098807
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane protein complex AT3G26740
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane Os01g0102900

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009856 Light regulated Lir1
Mapman id Description
1.1.5.2.3 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR-regulatory protein (LIR1)