Gene: Sopen08g024970

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g024970
  • Transcript Identifier Sopen08g024970.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 64772559-64776680 : positive

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g024970.1

Descriptions

  • Description Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: response to chitin, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase , Zinc finger, C5HC2-type , Transcription factor jumonji , Transcription factor jumonji, JmjN | BEST Arabidopsis thaliana protein match is: relative of early flowering 6
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045815
ISO
PLAZA Integrative Orthologypositive regulation of gene expression, epigenetic Os10g0577600
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT5G46910
GO:0010200
ISO
PLAZA Integrative Orthologyresponse to chitin AT5G46910
GO:0048439
ISO
PLAZA Integrative Orthologyflower morphogenesis Os10g0577600

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032454
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K9 specific) Os10g0577600
GO:0032452
ISO
PLAZA Integrative Orthologyhistone demethylase activity AT5G46910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000792
ISO
PLAZA Integrative Orthologyheterochromatin Os10g0577600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003349 JmjN domain
IPR003347 JmjC domain
IPR004198 Zinc finger, C5HC2-type
Mapman id Description
12.3.3.8.5 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM8)