Gene: AT5G46910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G46910
  • Transcript Identifier AT5G46910.1
  • Gene Type Coding gene
  • Location Chr5 : 19046888-19050880 : positive

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G46910.1
  • uniprot F4KIX0

Descriptions

  • Description Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
  • Computational description Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: relative of early flowering 6 (TAIR:AT3G48430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0006338
IBA
Gene Ontologychromatin remodeling2
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0016577
IEA
GOA Databasehistone demethylation
GO:0010200
IEP
GOA Databaseresponse to chitin
GO:0045815
ISO
PLAZA Integrative Orthologypositive regulation of gene expression, epigenetic Os10g0577600
GO:0048439
ISO
PLAZA Integrative Orthologyflower morphogenesis Os10g0577600

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0032452
IDA
IBA
Gene Ontologyhistone demethylase activity2 3
GO:0034647
IBA
Gene Ontologyhistone demethylase activity (H3-trimethyl-K4 specific)2
GO:0032454
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K9 specific) Os10g0577600

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus2
GO:0000792
ISO
PLAZA Integrative Orthologyheterochromatin Os10g0577600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003347 JmjC domain
IPR004198 Zinc finger, C5HC2-type
IPR003349 JmjN domain
Mapman id Description
12.3.3.8.5 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM8)