Gene: Sopen07g028100
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen07g028100
- Transcript Identifier Sopen07g028100.1
- Gene Type Coding gene
- Location Spenn-ch07 : 73808338-73811194 : positive
Gene Family Information
- ID HOM05D000383
- #Genes/#Species 1279/94
- Phylogenetic origin
- ID ORTHO05D000730
- #Genes/#Species 648/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen07g028100.1
Descriptions
- Description putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | expansin B3 (EXPB3) | INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening | LOCATED IN: endomembrane system, extracellular region | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase , Pollen allergen, N-terminal , Rare lipoprotein A , Major pollen allergen Lol pI , Expansin/Lol pI , Expansin 45, endoglucanase-like , Pollen allergen/expansin, C-terminal | BEST Arabidopsis thaliana protein match is: expansin B1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019953 | IEA | InterPro | sexual reproduction | |
| GO:0006949 | ISO | PLAZA Integrative Orthology | syncytium formation | AT4G28250 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005576 | IEA | InterPro | extracellular region | |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G28250 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
| IPR036908 | RlpA-like domain superfamily |
| IPR007112 | Expansin/pollen allergen, DPBB domain |
| IPR007117 | Expansin, cellulose-binding-like domain |
| IPR036749 | Expansin, cellulose-binding-like domain superfamily |
| IPR007118 | Expansin/Lol pI |
| IPR005795 | Major pollen allergen Lol pI |
| Mapman id | Description |
|---|---|
| 21.4.2.3 | Cell wall organisation.cell wall proteins.expansin activities.beta-class expansin |