Gene: Sopen07g027730
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen07g027730
- Transcript Identifier Sopen07g027730.1
- Gene Type Coding gene
- Location Spenn-ch07 : 73399173-73400429 : negative
Gene Family Information
- ID HOM05D000377
- #Genes/#Species 1292/100
- Phylogenetic origin
- ID ORTHO05D000892
- #Genes/#Species 568/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen07g027730.1
Descriptions
- Description Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). | SOMNUS (SOM) | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type | BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010187 | ISO | PLAZA Integrative Orthology | negative regulation of seed germination | AT1G03790 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT1G03790 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G44260 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G03790 |
| GO:0010494 | ISO | PLAZA Integrative Orthology | cytoplasmic stress granule | AT5G44260 |
| GO:0000932 | ISO | PLAZA Integrative Orthology | P-body | AT5G44260 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.8.2 | RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF) |