Gene: AT5G44260
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G44260
- Transcript Identifier AT5G44260.1
- Gene Type Coding gene
- Location Chr5 : 17829974-17831119 : negative
Gene Family Information
- ID HOM05D000377
- #Genes/#Species 1292/100
- Phylogenetic origin
- ID ORTHO05D000892
- #Genes/#Species 568/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G44260.1
- Alias AtTZF5,TZF5,Tandem CCCH Zinc Finger protein 5
- uniprot Q9FKW2
Descriptions
- Description Zinc finger C-x8-C-x5-C-x3-H type family protein
- Computational description Zinc finger C-x8-C-x5-C-x3-H type family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G03790.1); Has 1182 Blast hits to 968 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 15; Plants - 396; Viruses - 3; Other Eukaryotes - 353 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0000932 | IEA | GOA Database | P-body | |
| GO:0000932 | IDA | Gene Ontology | P-body | 2 |
| GO:0010494 | IEA | GOA Database | cytoplasmic stress granule | |
| GO:0010494 | IDA | Gene Ontology | cytoplasmic stress granule | 2 |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.8.2 | RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF) |