Gene: Sopen06g035790

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g035790
  • Transcript Identifier Sopen06g035790.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 60570189-60570820 : positive

Gene Family Information

  • ID HOM05D001776
  • #Genes/#Species 367/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g035790.1

Descriptions

  • Description Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | methyl-CPG-binding domain 4 (MBD4) | FUNCTIONS IN: methyl-CpG binding, DNA binding | INVOLVED IN: biological_process unknown | LOCATED IN: nucleus | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Methyl-CpG DNA binding , Zinc finger, CW-type | BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 1
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G63030
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT3G63030

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G63030

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011124 Zinc finger, CW-type
IPR001739 Methyl-CpG DNA binding
IPR016177 DNA-binding domain superfamily
Mapman id Description
12.5.4.1 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD1-4/12)