Gene: Sopen06g034670
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g034670
- Transcript Identifier Sopen06g034670.1
- Gene Type Coding gene
- Location Spenn-ch06 : 59714163-59714999 : positive
Gene Family Information
- ID HOM05D000813
- #Genes/#Species 727/97
- Phylogenetic origin
- ID ORTHO05D000995
- #Genes/#Species 526/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen06g034670.1
Descriptions
- Description nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: transport, nucleocytoplasmic transport | LOCATED IN: intracellular | EXPRESSED IN: flower, leaf | EXPRESSED DURING: petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 , Nuclear transport factor 2, Eukaryote , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Protein of unknown function DUF1675 | BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007165 | IEA | InterPro | signal transduction | |
| GO:0010581 | ISO | PLAZA Integrative Orthology | regulation of starch biosynthetic process | AT3G02140 |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT3G02140 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT3G02140 |
| GO:0009788 | ISO | PLAZA Integrative Orthology | negative regulation of abscisic acid-activated signaling pathway | AT3G02140 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G02140 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G02140 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.51.3 | RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (AFP/NINJA) |