Gene: Sopen06g033030

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g033030
  • Transcript Identifier Sopen06g033030.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 58583736-58586340 : negative

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g033030.1

Descriptions

  • Description beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. | tubulin beta 8 (TUB8) | CONTAINS InterPro DOMAIN/s: Beta tubulin , Tubulin , Tubulin/FtsZ, GTPase domain , Tubulin/FtsZ, N-terminal , Tubulin/FtsZ, C-terminal , Beta tubulin, autoregulation binding site , Tubulin, conserved site , Tubulin/FtsZ, 2-layer sandwich domain | BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 ., Tubulin beta-2 chain (Beta-2 tubulin) - Oryza sativa (Rice), Tubulin/FtsZ, GTPase domain
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007017
IEA
InterPromicrotubule-based process
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT4G20890

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IEA
InterProGTPase activity
GO:0005525
IEA
InterProGTP binding
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G44340
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G44340

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005874
IEA
InterPromicrotubule
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT5G44340
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G20890
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G44340
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT5G44340
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G44340
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT5G44340
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT4G20890
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G44340

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR000217 Tubulin
IPR023123 Tubulin, C-terminal
IPR003008 Tubulin/FtsZ, GTPase domain
IPR008280 Tubulin/FtsZ, C-terminal
IPR002453 Beta tubulin
IPR037103 Tubulin/FtsZ-like, C-terminal domain
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin