Gene: Sopen06g024940

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g024940
  • Transcript Identifier Sopen06g024940.3
  • Gene Type Coding gene
  • Location Spenn-ch06 : 52380947-52385491 : positive

Gene Family Information

  • ID HOM05D001537
  • #Genes/#Species 414/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g024940.3

Descriptions

  • Description RAD3-like DNA-binding helicase protein | FUNCTIONS IN: in 6 functions | INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site , DEAD2 , DEAD-like helicase, N-terminal , Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type , DNA helicase (DNA repair), Rad3 type , Helicase, ATP-dependent, c2 type | BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc06g066670.4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003678
IEA
InterProDNA helicase activity
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
InterProhelicase activity
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc06g066670.4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010614 DEAD2
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR006555 ATP-dependent helicase, C-terminal
IPR006554 Helicase-like, DEXD box c2 type
IPR013020 ATP-dependent helicase Rad3/Chl1-like
IPR045028 Helicase superfamily 1/2, DinG/Rad3-like
IPR028331 ATP-dependent RNA helicase CHL1/DDX11
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
35.1 not assigned.annotated