Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 7.2e-206 720.3 354 100.0
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.6e-205 718.0 354 99.7
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 8.2e-202 706.8 350 98.9
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 9.4e-190 666.8 354 92.7
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 1.2e-187 659.8 356 92.7
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 9.1e-185 650.2 354 91.2
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.3e-167 593.2 354 84.2
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 4.3e-166 588.2 355 80.8
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 6.4e-162 574.3 354 79.1
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 2.4e-161 572.4 349 80.2
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.0e-159 567.0 347 78.7
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.0e-159 565.5 334 81.7
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 5.6e-158 561.2 337 80.7
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.6e-157 559.7 333 81.4
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.8e-157 558.9 336 81.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.7e-157 558.1 356 77.2
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 4.7e-157 558.1 329 81.2
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 8.0e-157 557.4 354 76.6
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.1e-156 557.0 334 82.3
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 1.1e-156 557.0 349 79.7
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.4e-156 556.6 325 82.8
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 6.8e-156 554.3 335 80.6
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 6.8e-156 554.3 338 79.6
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.2e-155 553.5 334 79.3
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.5e-155 553.1 324 82.7
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 2.0e-155 552.7 350 77.7
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.6e-155 552.4 350 78.0
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.6e-155 552.4 342 78.1
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 2.6e-155 552.4 324 81.8
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 3.4e-155 552.0 332 81.3
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.4e-155 552.0 355 75.5
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 5.8e-155 551.2 321 82.6
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 7.5e-155 550.8 329 80.5
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 7.5e-155 550.8 326 81.9
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 7.5e-155 550.8 330 79.4
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.3e-154 550.1 324 83.0
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 1.7e-154 549.7 324 83.0
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 2.2e-154 549.3 344 77.9
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 2.2e-154 549.3 345 78.0
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.9e-154 548.9 337 80.7
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 3.7e-154 548.5 324 82.1
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 3.7e-154 548.5 328 79.6
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 3.7e-154 548.5 351 77.8
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 3.7e-154 548.5 336 80.1
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 4.9e-154 548.1 324 82.4
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 4.9e-154 548.1 337 80.7
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 4.9e-154 548.1 337 80.7
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 4.9e-154 548.1 325 82.5
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 8.3e-154 547.4 352 75.6
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 8.3e-154 547.4 327 80.1
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.1e-153 547.0 361 75.3
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 1.9e-153 546.2 337 80.1
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 4.1e-153 545.0 317 82.3
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 7.0e-153 544.3 334 80.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 7.0e-153 544.3 344 76.5
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 9.2e-153 543.9 337 80.4
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 9.2e-153 543.9 347 77.2
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.6e-152 543.1 336 81.0
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 2.0e-152 542.7 346 77.2
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 2.7e-152 542.3 350 74.9
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 4.6e-152 541.6 349 76.5
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 7.8e-152 540.8 331 80.1
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.7e-151 539.7 335 77.6
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.3e-151 539.3 318 82.4
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 3.0e-151 538.9 351 74.9
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.1e-148 530.4 329 79.6
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 1.8e-148 529.6 318 80.8
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 6.8e-148 527.7 318 80.2
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.2e-147 526.9 318 80.2
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 3.4e-147 525.4 318 80.2
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 5.8e-147 524.6 331 76.1
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.3e-146 523.5 354 72.6
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 2.1e-144 516.2 328 75.3
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 2.7e-144 515.8 323 76.5
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 3.0e-143 512.3 326 75.8
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 6.6e-143 511.1 322 76.1
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.5e-142 510.0 311 80.4
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.9e-142 509.6 324 76.2
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 3.3e-142 508.8 326 75.8
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 7.3e-142 507.7 326 75.5
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 9.5e-142 507.3 324 75.9
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 1.6e-141 506.5 343 73.8
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 2.1e-141 506.1 328 74.4
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.1e-141 506.1 328 74.4
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 3.6e-141 505.4 322 74.2
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 3.6e-141 505.4 344 71.5
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.4e-140 502.7 328 74.1
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 2.4e-140 502.7 305 80.3
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.4e-140 502.7 360 69.4
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 4.0e-140 501.9 323 75.5
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 5.2e-140 501.5 351 73.2
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 4.4e-139 498.4 291 84.5
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 7.6e-139 497.7 320 74.7
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 9.2e-137 490.7 338 71.0
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 1.5e-134 483.4 354 68.4
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.9e-134 483.0 311 77.2
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 5.6e-134 481.5 293 80.5
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 2.6e-131 472.6 319 74.9
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 5.8e-131 471.5 289 78.9
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 3.8e-130 468.8 364 67.0
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 1.1e-126 457.2 255 83.9
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 4.3e-126 455.3 349 67.6
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.3e-126 455.3 267 81.3
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.1e-125 453.0 267 80.9
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 4.9e-122 441.8 265 78.9
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.6e-120 436.8 274 78.1
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.9e-114 416.0 267 75.3
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.9e-110 403.3 232 81.9
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.6e-109 400.2 229 85.6
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 2.9e-106 389.4 340 57.9
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 8.4e-106 387.9 339 59.0
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.4e-105 387.1 334 58.1
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.7e-85 320.5 312 53.8
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 8.5e-82 308.1 207 75.4
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 8.8e-79 298.1 277 59.6
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 9.7e-78 294.7 213 65.3
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.1e-76 289.7 176 80.7
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 5.5e-65 252.3 218 59.2
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.3e-63 246.9 146 79.5
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 1.2e-59 234.6 208 61.1
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.5e-57 227.6 248 51.6
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 3.0e-55 219.9 362 36.2
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 8.9e-55 218.4 336 45.8
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.0e-50 204.9 196 57.1
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 2.2e-45 187.2 370 34.9
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 2.4e-44 183.7 115 79.1
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.9e-37 160.2 112 68.8
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.4e-36 157.9 227 47.1
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 1.7e-34 151.0 316 34.2
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 9.9e-22 108.6 57 91.2
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 6.4e-21 105.9 98 58.2
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 8.1e-16 89.0 45 91.1
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.1e-15 88.6 249 30.5
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 1.2e-11 75.1 55 67.3
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 1.6e-11 74.7 78 48.7
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 9.6e-09 65.5 30 93.3
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 1.4e-07 61.6 87 51.7
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 6.9e-07 59.3 40 72.5


User provided reference genes

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