Gene: Sopen06g011330

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g011330
  • Transcript Identifier Sopen06g011330.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 29371692-29402117 : negative

Gene Family Information

  • ID HOM05D000002
  • #Genes/#Species 26594/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g011330.1

Descriptions

  • Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a MADS box transcription factor. Expressed in quiescent center. | AGAMOUS-like 42 (AGL42) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus, chloroplast | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: AGAMOUS-like 71 .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033896 MADS MEF2-like
IPR002100 Transcription factor, MADS-box
IPR001878 Zinc finger, CCHC-type
IPR036879 Transcription factor, MADS-box superfamily
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)