Gene: Sopen06g010870
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g010870
- Transcript Identifier Sopen06g010870.1
- Gene Type Coding gene
- Location Spenn-ch06 : 28604593-28634604 : positive
Gene Family Information
- ID HOM05D000014
- #Genes/#Species 7439/72
- Phylogenetic origin
- ID ORTHO05D000016
- #Genes/#Species 4583/65
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g010870.1
Descriptions
- Description Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1) | FUNCTIONS IN: protein binding | INVOLVED IN: intracellular transport | LOCATED IN: in 7 components | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: PapD-like , Major sperm protein , Vesicle-associated membrane protein | BEST Arabidopsis thaliana protein match is: plant VAP homolog 12
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IEA | InterPro | zinc ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005789 | IEA | InterPro | endoplasmic reticulum membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005162 | Retrotransposon gag domain |
| IPR013783 | Immunoglobulin-like fold |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR016763 | Vesicle-associated membrane-protein-associated protein |
| IPR007527 | Zinc finger, SWIM-type |
| IPR008962 | PapD-like superfamily |
| IPR000535 | Major sperm protein (MSP) domain |
| IPR006564 | Zinc finger, PMZ-type |
| Mapman id | Description |
|---|---|
| 20.7.1 | Cytoskeleton organisation.endoplasmic reticulum-cytoskeleton-plasma membrane interface.contact site protein (VAP27) |