Gene: Sopen05g004910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g004910
  • Transcript Identifier Sopen05g004910.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 3600152-3604794 : negative

Gene Family Information

  • ID HOM05D001612
  • #Genes/#Species 400/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g004910.1

Descriptions

  • Description SYCO ARATH | FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding | INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation | LOCATED IN: mitochondrion, chloroplast | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold , Cysteinyl-tRNA synthetase, class Ia , Cysteinyl-tRNA synthetase, class Ia, N-terminal , Cysteinyl-tRNA synthetase, class Ia, DALR , Aminoacyl-tRNA synthetase, class 1a, anticodon-binding , Cysteinyl-tRNA synthetase, class Ia, C-terminal | BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006423
IEA
InterProcysteinyl-tRNA aminoacylation
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT5G38830

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0005524
IEA
InterProATP binding
GO:0004817
IEA
InterProcysteine-tRNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G38830

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase
IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
IPR015803 Cysteine-tRNA ligase
IPR032678 tRNA synthetases class I, catalytic domain
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
Mapman id Description
17.2.5 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase