Gene: Sopen04g030790

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g030790
  • Transcript Identifier Sopen04g030790.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 72555707-72560703 : positive

Gene Family Information

  • ID HOM05D000676
  • #Genes/#Species 848/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g030790.1

Descriptions

  • Description Encodes a protein with xylanase activity. | RXF12 | FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: cell wall | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 10 growth stages | CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 , Carbohydrate-binding, CenC-like , Glycoside hydrolase, catalytic core , Glycoside hydrolase, subgroup, catalytic core , Galactose-binding domain-like | BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798
IEA
InterProhydrolase activity, acting on glycosyl bonds
GO:0031176
ISO
PLAZA Integrative Orthologyendo-1,4-beta-xylanase activity AT1G58370

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT1G58370

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001000 Glycoside hydrolase family 10 domain
IPR044846 Glycoside hydrolase family 10
IPR003305 Carbohydrate-binding, CenC-like
IPR008979 Galactose-binding-like domain superfamily
IPR017853 Glycoside hydrolase superfamily
Mapman id Description
21.2.2.2.4 Cell wall organisation.hemicellulose.xylan.modification and degradation.endo-beta-1,4-xylanase