Gene: Sopen04g030180

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g030180
  • Transcript Identifier Sopen04g030180.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 71813932-71818650 : positive

Gene Family Information

  • ID HOM05D000611
  • #Genes/#Species 929/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g030180.1

Descriptions

  • Description Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin. | HYPONASTIC LEAVES 1 (HYL1) | CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding , Double-stranded RNA-binding-like | BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009735
ISO
PLAZA Integrative Orthologyresponse to cytokinin AT1G09700
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT1G09700
GO:0035279
ISO
PLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNA AT1G09700
GO:0010305
ISO
PLAZA Integrative Orthologyleaf vascular tissue pattern formation AT1G09700
GO:0010589
ISO
PLAZA Integrative Orthologyleaf proximal/distal pattern formation AT1G09700
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT1G09700
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT1G09700
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT1G09700
GO:0031054
ISO
PLAZA Integrative Orthologypre-miRNA processing AT1G09700
GO:0016075
IEA
InterProrRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G09700
GO:0003725
IEA
InterProdouble-stranded RNA binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT1G09700
GO:0035198
ISO
PLAZA Integrative OrthologymiRNA binding AT1G09700
GO:0004525
IEA
InterProribonuclease III activity
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010445
ISO
PLAZA Integrative Orthologynuclear dicing body AT1G09700
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G09700
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT1G09700

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014720 Double-stranded RNA-binding domain
IPR044450 AtDRB-like, first double-stranded RNA binding domain, plant
IPR011907 Ribonuclease III
IPR031147 Double-stranded RNA-binding protein
Mapman id Description
16.9.2.1.2 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component HYL1