Gene: Sopen04g022050

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g022050
  • Transcript Identifier Sopen04g022050.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 59452807-59455334 : negative

Gene Family Information

  • ID HOM05D006573
  • #Genes/#Species 122/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g022050.1

Descriptions

  • Description Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex | non-photochemical quenching 1 (NPQ1) | FUNCTIONS IN: violaxanthin de-epoxidase activity | INVOLVED IN: fatty acid metabolic process, response to heat, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle | LOCATED IN: chloroplast thylakoid lumen, chloroplast photosystem II, chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Lipocalin conserved site , Calycin , Violaxanthin de-epoxidase , Calycin-like | BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010028
IEA
InterProxanthophyll cycle
GO:0015994
ISO
PLAZA Integrative Orthologychlorophyll metabolic process AT1G08550
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT1G08550
GO:0016122
ISO
PLAZA Integrative Orthologyxanthophyll metabolic process AT1G08550
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus Solyc04g050930.3
GO:0006631
ISO
PLAZA Integrative Orthologyfatty acid metabolic process AT1G08550

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046422
IEA
InterProviolaxanthin de-epoxidase activity
GO:0019904
ISO
PLAZA Integrative Orthologyprotein domain specific binding AT1G08550
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G08550

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G08550
GO:0031977
ISO
PLAZA Integrative Orthologythylakoid lumen AT1G08550
GO:0030095
ISO
PLAZA Integrative Orthologychloroplast photosystem II AT1G08550
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT1G08550

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010788 VDE lipocalin domain
IPR012674 Calycin
IPR044682 Violaxanthin de-epoxidase
Mapman id Description
1.1.1.5.3.1.2.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.xanthophyll cycle.violaxanthin de-epoxidase (VDE)
9.1.6.2.2 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.violaxanthin de-epoxidase (VDE)