Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 2.7e-280 968.0 479 100.0
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.1e-278 962.6 479 99.4
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.4e-265 919.1 479 93.7
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 3.6e-253 877.9 479 89.6
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.2e-248 862.8 479 87.7
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 9.0e-244 846.7 479 86.2
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.8e-215 752.7 485 77.3
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 4.2e-185 651.7 483 68.1
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.7e-184 649.0 486 67.9
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 8.0e-184 647.5 441 72.6
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.6e-179 633.3 482 66.4
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.3e-178 629.4 482 65.1
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 2.9e-178 629.0 482 65.8
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 1.9e-177 626.3 480 66.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.2e-176 623.6 481 64.7
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 6.1e-176 621.3 467 68.1
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.0e-174 616.3 489 65.4
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 2.0e-174 616.3 484 63.8
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.6e-174 615.9 441 68.0
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 4.4e-174 615.1 447 68.9
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.4e-174 615.1 489 65.2
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 4.4e-174 615.1 462 67.7
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 7.5e-174 614.4 470 65.1
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 9.8e-174 614.0 493 64.5
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 9.8e-174 614.0 493 64.5
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 9.8e-174 614.0 483 66.0
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 1.3e-173 613.6 448 68.3
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 1.3e-173 613.6 441 70.1
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 3.7e-173 612.1 494 63.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 3.7e-173 612.1 494 63.6
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 8.3e-173 610.9 510 61.6
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 1.1e-172 610.5 463 68.9
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 2.4e-172 609.4 450 66.2
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 4.1e-172 608.6 488 63.5
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 4.1e-172 608.6 486 65.2
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 7.0e-172 607.8 483 63.8
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 7.0e-172 607.8 427 69.8
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 1.2e-171 607.1 481 64.7
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.7e-171 605.9 516 60.3
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 3.5e-171 605.5 354 81.1
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 3.5e-171 605.5 484 63.6
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 5.9e-171 604.7 495 64.2
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.9e-171 604.7 493 63.1
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.0e-170 604.0 460 66.5
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 2.3e-170 602.8 373 76.4
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 8.6e-170 600.9 441 68.7
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 2.1e-168 596.3 486 63.6
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 4.7e-168 595.1 373 75.1
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 4.7e-168 595.1 524 62.4
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 6.2e-168 594.7 357 80.4
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 8.0e-168 594.3 495 63.0
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.4e-167 593.6 378 77.5
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.1e-167 592.4 430 66.7
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.8e-167 591.3 380 73.2
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 8.9e-167 590.9 356 78.7
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 8.9e-167 590.9 356 79.2
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 8.9e-167 590.9 427 71.0
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.6e-166 589.3 411 68.9
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.6e-166 589.3 356 78.9
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 5.8e-166 588.2 485 62.3
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 7.5e-166 587.8 415 69.6
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 9.8e-166 587.4 391 74.4
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.7e-165 586.6 380 73.7
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 2.2e-165 586.3 356 78.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 2.9e-165 585.9 369 76.7
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.9e-165 585.9 369 76.7
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 3.2e-164 582.4 377 75.6
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 4.1e-164 582.0 455 66.2
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 5.4e-164 581.6 501 62.3
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 5.4e-164 581.6 366 75.7
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 7.0e-164 581.3 390 71.8
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 7.0e-164 581.3 418 70.3
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 3.5e-163 578.9 471 62.8
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 4.6e-163 578.6 356 77.0
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.7e-162 576.6 460 63.3
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 2.3e-162 576.2 357 78.7
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 3.0e-162 575.9 372 72.6
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 6.6e-162 574.7 488 60.7
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.5e-161 573.5 484 61.2
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 5.6e-161 571.6 389 72.5
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 8.1e-160 567.8 443 64.8
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 2.3e-159 566.2 357 77.3
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 2.9e-157 559.3 485 61.0
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.1e-156 557.4 438 65.3
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.1e-155 553.1 464 60.8
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 7.8e-155 551.2 369 73.7
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 6.6e-154 548.1 380 70.0
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.4e-150 535.8 484 60.1
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 5.8e-150 535.0 484 59.9
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.4e-148 530.4 375 70.1
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 2.4e-148 529.6 570 51.2
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.9e-146 522.3 366 67.5
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 6.6e-146 521.5 362 72.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 9.6e-145 517.7 307 77.5
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 9.6e-145 517.7 308 77.3
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.1e-144 516.5 308 76.9
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 5.2e-143 511.9 424 62.3
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 8.9e-143 511.1 461 57.9
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.9e-137 493.4 359 65.5
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.6e-136 490.3 267 83.1
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.5e-131 472.6 421 60.6
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 1.3e-130 470.7 370 61.9
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.1e-129 467.6 404 57.9
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.4e-127 460.7 331 64.7
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 4.8e-120 435.6 349 58.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.0e-109 401.4 295 61.0
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.7e-109 400.6 272 68.8
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 9.0e-103 378.3 314 62.4
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.6e-99 367.5 242 72.7
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.4e-94 349.7 376 53.7
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 3.6e-91 339.7 194 78.9
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 6.1e-75 285.8 204 59.8
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 6.1e-75 285.8 204 59.8
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.2e-73 281.6 204 59.3
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.7e-73 279.3 204 58.3
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.1e-71 275.0 327 44.0
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.5e-68 264.6 332 41.9
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 9.5e-60 235.3 210 59.5
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 9.5e-36 155.6 98 65.3
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 9.5e-36 155.6 141 61.0
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 5.8e-17 93.2 93 62.4
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 6.7e-13 79.7 84 59.5
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 4.3e-12 77.0 269 24.2
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.3e-11 75.5 270 23.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 299 22.4
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 299 22.4
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.2e-11 73.2 299 22.4
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 6.2e-11 73.2 398 23.6
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 8.1e-11 72.8 311 23.2
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 8.1e-11 72.8 316 22.5
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.4e-10 72.0 299 22.4
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.4e-10 72.0 284 24.6
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.8e-10 71.6 276 23.9
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 1.8e-10 71.6 299 22.7
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.8e-10 71.6 270 23.3
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.4e-10 71.2 272 23.9
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.4e-10 71.2 315 23.5
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.1e-10 70.9 251 23.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.1e-10 70.9 301 22.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 5.3e-10 70.1 400 22.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 6.9e-10 69.7 315 22.5
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.5e-09 68.6 386 20.7
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 2.0e-09 68.2 407 22.9
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.4e-09 67.4 295 23.7
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.7e-08 65.1 134 26.1
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 3.8e-08 63.9 158 23.4
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.1e-07 62.4 158 23.4


User provided reference genes

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