Gene: Sopen04g020550

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g020550
  • Transcript Identifier Sopen04g020550.2
  • Gene Type Coding gene
  • Location Spenn-ch04 : 54069981-54072539 : positive

Gene Family Information

  • ID HOM05D000649
  • #Genes/#Species 876/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g020550.2

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: root, gynoecium, carpel, stamen | EXPRESSED DURING: petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT3G54770
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G54770
GO:0010029
ISO
PLAZA Integrative Orthologyregulation of seed germination AT3G54770
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G54770

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G46780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G54770

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
35.1 not assigned.annotated