Gene: AT3G54770

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54770
  • Transcript Identifier AT3G54770.3
  • Gene Type Coding gene
  • Location Chr3 : 20274523-20275827 : negative

Gene Family Information

  • ID HOM05D000649
  • #Genes/#Species 876/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54770.3
  • symbol ARP1
  • full_name ABA-regulated RNA-binding protein 1
  • uniprot Q9M1S3

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, gynoecium, carpel, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1); Has 10710 Blast hits to 8449 proteins in 510 species: Archae - 0; Bacteria - 384; Metazoa - 5849; Fungi - 946; Plants - 2782; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051252
NAS
Gene Ontologyregulation of RNA metabolic process
GO:0009414
IMP
Gene Ontologyresponse to water deprivation1
GO:0009651
IMP
Gene Ontologyresponse to salt stress1
GO:0009737
IEP
Gene Ontologyresponse to abscisic acid1
GO:0010029
IMP
Gene Ontologyregulation of seed germination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function
GO:0003729
IDA
GOA DatabasemRNA binding
GO:0003729
HDA
Gene OntologymRNA binding2
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005575
ND
Gene Ontologycellular_component
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
IBA
Gene Ontologynucleus1 3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated