Gene: Sopen04g005740

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g005740
  • Transcript Identifier Sopen04g005740.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 4159409-4162923 : negative

Gene Family Information

  • ID HOM05D000845
  • #Genes/#Species 706/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g005740.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: UBP1-associated protein 2A
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT2G22090
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G22090
GO:0035925
ISO
PLAZA Integrative OrthologymRNA 3'-UTR AU-rich region binding AT2G22090
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G22090

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G22090

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
35.1 not assigned.annotated