Gene: Sopen03g033980

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g033980
  • Transcript Identifier Sopen03g033980.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 69150617-69152370 : positive

Gene Family Information

  • ID HOM05D000600
  • #Genes/#Species 940/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g033980.1

Descriptions

  • Description Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. | IRREGULAR XYLEM 6 (IRX6) | INVOLVED IN: secondary cell wall biogenesis | LOCATED IN: plasma membrane, anchored to membrane | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant , COBRA-like | BEST Arabidopsis thaliana protein match is: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010215
IEA
InterProcellulose microfibril organization
GO:0002239
ISO
PLAZA Integrative Orthologyresponse to oomycetes AT5G60950
GO:0009834
ISO
PLAZA Integrative Orthologyplant-type secondary cell wall biogenesis AT5G15630

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031225
IEA
InterProanchored component of membrane
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT5G15630
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G15630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006918 COBRA, plant
Mapman id Description
21.1.2.2 Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)