Gene: Sopen03g033920
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g033920
- Transcript Identifier Sopen03g033920.1
- Gene Type Coding gene
- Location Spenn-ch03 : 69081717-69087511 : negative
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen03g033920.1
Descriptions
- Description MADS-box protein CMB1 - Dianthus caryophyllus (Carnation) (Clove pink), This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. | SEPALLATA 4 (SEP4) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: in 6 processes | LOCATED IN: nucleus | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
GO:0048441 | ISO | PLAZA Integrative Orthology | petal development | AT2G03710 |
GO:0048440 | ISO | PLAZA Integrative Orthology | carpel development | AT2G03710 |
GO:0010076 | ISO | PLAZA Integrative Orthology | maintenance of floral meristem identity | AT2G03710 |
GO:0048443 | ISO | PLAZA Integrative Orthology | stamen development | AT2G03710 |
GO:0048442 | ISO | PLAZA Integrative Orthology | sepal development | AT2G03710 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0046983 | IEA | InterPro | protein dimerization activity | |
GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G03710 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IEA | InterPro | nucleus |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |