Gene: Sopen03g004420

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g004420
  • Transcript Identifier Sopen03g004420.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 3090682-3093682 : negative

Gene Family Information

  • ID HOM05D001296
  • #Genes/#Species 485/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g004420.1

Descriptions

  • Description Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV | homologous to budding yeast RPB5. | NRPB5 | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: transcription | LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal , RNA polymerase, subunit H/Rpb5 C-terminal , DNA-directed RNA polymerase, RPB5 subunit , RNA polymerase, subunit H/Rpb5, conserved site | BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005571 RNA polymerase, Rpb5, N-terminal
IPR036710 RNA polymerase Rpb5, N-terminal domain superfamily
IPR039531 DNA-directed RNA polymerase subunit Rpb5-like
Mapman id Description
35.1 not assigned.annotated