Gene: Sopen02g034110
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g034110
- Transcript Identifier Sopen02g034110.1
- Gene Type Coding gene
- Location Spenn-ch02 : 55461199-55471165 : positive
Gene Family Information
- ID HOM05D001522
- #Genes/#Species 417/99
- Phylogenetic origin
- ID ORTHO05D001547
- #Genes/#Species 391/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen02g034110.1
Descriptions
- Description DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 2) (NsRpoT-B) - Nicotiana sylvestris (Wood tobacco), Nucleus encoded plastid RNA polymerase. Localized in mitochondria and chloroplast. | DNA/RNA polymerases superfamily protein | FUNCTIONS IN: RNA polymerase activity, DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: transcription | LOCATED IN: mitochondrion, chloroplast, thylakoid membrane | EXPRESSED IN: stem | CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type | BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 ., DNA-directed RNA polymerase, bacteriophage type
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0034062 | ISO | PLAZA Integrative Orthology | 5'-3' RNA polymerase activity | AT5G15700 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G15700 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G15700 |
| GO:0042651 | ISO | PLAZA Integrative Orthology | thylakoid membrane | AT5G15700 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR037159 | DNA-directed RNA polymerase, N-terminal domain superfamily |
| IPR029262 | DNA-directed RNA polymerase, N-terminal |
| IPR024075 | DNA-directed RNA polymerase, helix hairpin domain superfamily |
| IPR002092 | DNA-directed RNA polymerase, phage-type |
| IPR043502 | DNA/RNA polymerase superfamily |
| Mapman id | Description |
|---|---|
| 15.6.1.1 | RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) |