Gene: Sopen02g033910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g033910
  • Transcript Identifier Sopen02g033910.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 55279918-55283124 : positive

Gene Family Information

  • ID HOM05D000600
  • #Genes/#Species 940/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g033910.1

Descriptions

  • Description Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions. | COBRA (COB) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization | LOCATED IN: in 6 components | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant , COBRA-like | BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010215
IEA
InterProcellulose microfibril organization
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT5G60920
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT3G29810
GO:0009664
ISO
PLAZA Integrative Orthologyplant-type cell wall organization AT3G29810
GO:0009832
ISO
PLAZA Integrative Orthologyplant-type cell wall biogenesis AT3G29810
GO:0052324
ISO
PLAZA Integrative Orthologyplant-type cell wall cellulose biosynthetic process AT3G29810
GO:0009825
ISO
PLAZA Integrative Orthologymultidimensional cell growth AT5G60920
GO:0048354
ISO
PLAZA Integrative Orthologymucilage biosynthetic process involved in seed coat development AT3G29810
GO:0010214
ISO
PLAZA Integrative Orthologyseed coat development AT3G29810

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031225
IEA
InterProanchored component of membrane
GO:0009930
ISO
PLAZA Integrative Orthologylongitudinal side of cell surface AT5G60920
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT3G29810
GO:0009505
ISO
PLAZA Integrative Orthologyplant-type cell wall AT5G60920
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G60920
GO:0046658
ISO
PLAZA Integrative Orthologyanchored component of plasma membrane AT5G60920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006918 COBRA, plant
Mapman id Description
21.1.2.2 Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)