Gene: AT5G60920

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G60920
  • Transcript Identifier AT5G60920.1
  • Gene Type Coding gene
  • Location Chr5 : 24511466-24513932 : negative

Gene Family Information

  • ID HOM05D000600
  • #Genes/#Species 940/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G60920.1
  • symbol COB
  • full_name COBRA
  • uniprot Q94KT8

Descriptions

  • Description COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
  • Computational description COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009651
IMP
Gene Ontologyresponse to salt stress1
GO:0010215
IMP
IEA
Gene Ontologycellulose microfibril organization2
GO:0010215
IEA
InterProcellulose microfibril organization
GO:0052324
IBA
Gene Ontologyplant-type cell wall cellulose biosynthetic process3
GO:0006122
IBA
Gene Ontologymitochondrial electron transport, ubiquinol to cytochrome c3
GO:0009825
IMP
Gene Ontologymultidimensional cell growth4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031225
TAS, IEA
Gene Ontologyanchored component of membrane5
GO:0031225
IEA
InterProanchored component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005886
IDA
IEA
GOA Databaseplasma membrane
GO:0005886
ISM
Gene Ontologyplasma membrane
GO:0016328
IEA
GOA Databaselateral plasma membrane
GO:0005750
IBA
Gene Ontologymitochondrial respiratory chain complex III3
GO:0046658
IDA
IBA
Gene Ontologyanchored component of plasma membrane2 3
GO:0031224
IBA
Gene Ontologyintrinsic component of membrane3
GO:0009930
IDA
Gene Ontologylongitudinal side of cell surface6
GO:0009505
IDA
Gene Ontologyplant-type cell wall2
GO:0005739
HDA
ISM
Gene Ontologymitochondrion7
GO:0009897
ISS
Gene Ontologyexternal side of plasma membrane4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006918 COBRA, plant
Mapman id Description
21.1.2.2 Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)