Gene: Sopen02g019390

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g019390
  • Transcript Identifier Sopen02g019390.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 43391293-43401301 : positive

Gene Family Information

  • ID HOM05D004162
  • #Genes/#Species 169/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g019390.1

Descriptions

  • Description Encodes AtPOT1b. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004 | Shakirov et al, 2005 | Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b. | protection of telomeres 1b (AtPOT1b) | FUNCTIONS IN: DNA binding | INVOLVED IN: telomere maintenance | LOCATED IN: nuclear chromosome, telomeric region | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like , Nucleic acid-binding, OB-fold , Telomere end binding protein | BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000723
IEA
InterProtelomere maintenance
GO:0032212
ISO
PLAZA Integrative Orthologypositive regulation of telomere maintenance via telomerase AT2G05210
GO:0016233
ISO
PLAZA Integrative Orthologytelomere capping AT5G06310
GO:0032206
ISO
PLAZA Integrative Orthologypositive regulation of telomere maintenance AT2G05210

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0043047
IEA
InterProsingle-stranded telomeric DNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G05210
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT2G05210
GO:0042162
ISO
PLAZA Integrative Orthologytelomeric DNA binding AT2G05210

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000781
IEA
InterProchromosome, telomeric region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011564 Telomeric single stranded DNA binding POT1/Cdc13
IPR028389 Protection of telomeres protein 1
IPR012340 Nucleic acid-binding, OB-fold
IPR032042 Protection of telomeres protein 1, ssDNA-binding domain
Mapman id Description
13.2.5.1.2 Cell cycle organisation.DNA replication.telomere replication.telomerase ribonucleoprotein complex.associated component POT