Gene: Sopen02g017210

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g017210
  • Transcript Identifier Sopen02g017210.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 41354301-41356699 : positive

Gene Family Information

  • ID HOM05D002662
  • #Genes/#Species 258/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g017210.1

Descriptions

  • Description CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates. | CHC1 | CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain | BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT5G14170
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT5G14170
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development AT5G14170
GO:0010468
ISO
PLAZA Integrative Orthologyregulation of gene expression AT5G14170
GO:2000024
ISO
PLAZA Integrative Orthologyregulation of leaf development AT5G14170
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT5G14170

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G14170

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G14170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036885 SWIB/MDM2 domain superfamily
IPR019835 SWIB domain
IPR003121 SWIB/MDM2 domain
Mapman id Description
12.4.1.1.3 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.component SWP73