Gene: AT5G14170
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G14170
- Transcript Identifier AT5G14170.1
- Gene Type Coding gene
- Location Chr5 : 4568696-4570444 : negative
Gene Family Information
- ID HOM05D002662
- #Genes/#Species 258/99
- Phylogenetic origin
- ID ORTHO05D002957
- #Genes/#Species 252/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G14170.1
- symbol CHC1
- uniprot Q9FMT4
Descriptions
- Description SWIB/MDM2 domain superfamily protein
- Computational description CHC1; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT3G01890.1); Has 1254 Blast hits to 1169 proteins in 258 species: Archae - 0; Bacteria - 112; Metazoa - 460; Fungi - 424; Plants - 177; Viruses - 4; Other Eukaryotes - 77 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:2000024 | IMP | Gene Ontology | regulation of leaf development | 1 |
| GO:0006325 | IEA | GOA Database | chromatin organization | |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 2 |
| GO:0006898 | IBA | Gene Ontology | receptor-mediated endocytosis | 2 |
| GO:0010468 | IDA | Gene Ontology | regulation of gene expression | 1 |
| GO:0009909 | IMP | Gene Ontology | regulation of flower development | 1 |
| GO:0010224 | IEP | Gene Ontology | response to UV-B | 3 |
| GO:0006281 | IMP | Gene Ontology | DNA repair | 3 |
| GO:0048364 | IMP | Gene Ontology | root development | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032051 | IBA | Gene Ontology | clathrin light chain binding | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 1 2 |
| GO:0009507 | IBA | Gene Ontology | chloroplast | 2 |
| GO:0009506 | HDA IBA | Gene Ontology | plasmodesma | 2 5 |
| GO:0016514 | IBA | Gene Ontology | SWI/SNF complex | 2 |
| GO:0005829 | IBA, RCA | Gene Ontology | cytosol | 2 6 |
| GO:0071439 | IBA | Gene Ontology | clathrin complex | 2 |
| GO:0005886 | HDA IBA | Gene Ontology | plasma membrane | 2 7 |
| GO:0005794 | HDA IBA | Gene Ontology | Golgi apparatus | 2 8 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 9 |
| GO:0005773 | HDA | Gene Ontology | vacuole | 10 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.4.1.1.3 | Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.component SWP73 |