Gene: Sopen02g012110

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g012110
  • Transcript Identifier Sopen02g012110.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 34582070-34585993 : negative

Gene Family Information

  • ID HOM05D000002
  • #Genes/#Species 26594/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g012110.1

Descriptions

  • Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), zinc knuckle (CCHC-type) family protein | FUNCTIONS IN: zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type , DEK, C-terminal | BEST Arabidopsis thaliana protein match is: transcriptional coactivator p15 (PC4) family protein (KELP)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015074
IEA
InterProDNA integration

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
IPR036397 Ribonuclease H superfamily
IPR012337 Ribonuclease H-like superfamily
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
IPR025724 GAG-pre-integrase domain
IPR001584 Integrase, catalytic core
Mapman id Description
35.1 not assigned.annotated