Gene: Sopen01g046400
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g046400
- Transcript Identifier Sopen01g046400.1
- Gene Type Coding gene
- Location Spenn-ch01 : 103090582-103095339 : positive
Gene Family Information
- ID HOM05D000575
- #Genes/#Species 966/99
- Phylogenetic origin
- ID ORTHO05D003840
- #Genes/#Species 202/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen01g046400.1
Descriptions
- Description Encodes a putative serine hydroxymethyltransferase. | serine hydroxymethyltransferase 7 (SHM7) | FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity | INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain , Serine hydroxymethyltransferase, pyridoxal phosphate binding site , Pyridoxal phosphate-dependent transferase, major region, subdomain 1 , Serine hydroxymethyltransferase | BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 6
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019264 | IEA | InterPro | glycine biosynthetic process from serine | |
| GO:0035999 | IEA | InterPro | tetrahydrofolate interconversion | |
| GO:0044030 | ISO | PLAZA Integrative Orthology | regulation of DNA methylation | AT1G36370 |
| GO:0055063 | ISO | PLAZA Integrative Orthology | sulfate ion homeostasis | AT1G36370 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT1G36370 |
| GO:0046500 | ISO | PLAZA Integrative Orthology | S-adenosylmethionine metabolic process | AT1G36370 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0004372 | IEA | InterPro | glycine hydroxymethyltransferase activity | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G36370 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR001085 | Serine hydroxymethyltransferase |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| IPR039429 | Serine hydroxymethyltransferase-like domain |