Gene: AT1G36370

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G36370
  • Transcript Identifier AT1G36370.1
  • Gene Type Coding gene
  • Location Chr1 : 13696240-13698576 : negative

Gene Family Information

  • ID HOM05D000575
  • #Genes/#Species 966/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G36370.1
  • symbol SHM7
  • uniprot Q84WV0

Descriptions

  • Description serine hydroxymethyltransferase 7
  • Computational description serine hydroxymethyltransferase 7 (SHM7); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 6 (TAIR:AT1G22020.1); Has 11689 Blast hits to 11664 proteins in 2845 species: Archae - 258; Bacteria - 6485; Metazoa - 362; Fungi - 287; Plants - 350; Viruses - 6; Other Eukaryotes - 3941 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019264
IEA
GOA Databaseglycine biosynthetic process from serine
GO:0019264
IBA
Gene Ontologyglycine biosynthetic process from serine1
GO:0019264
IEA
InterProglycine biosynthetic process from serine
GO:0035999
IEA
Gene Ontologytetrahydrofolate interconversion
GO:0035999
IEA
InterProtetrahydrofolate interconversion
GO:0006730
IEA
GOA Databaseone-carbon metabolic process
GO:0006730
IBA
Gene Ontologyone-carbon metabolic process1
GO:0046653
IBA
Gene Ontologytetrahydrofolate metabolic process1
GO:0006565
IBA
Gene OntologyL-serine catabolic process1
GO:0046655
IBA
Gene Ontologyfolic acid metabolic process1
GO:0055063
IMP
Gene Ontologysulfate ion homeostasis2
GO:0046500
IMP
Gene OntologyS-adenosylmethionine metabolic process2
GO:0044030
IMP
Gene Ontologyregulation of DNA methylation2
GO:0046686
IEP
Gene Ontologyresponse to cadmium ion3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0030170
IEA
GOA Databasepyridoxal phosphate binding
GO:0030170
IBA
Gene Ontologypyridoxal phosphate binding1
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0004372
IEA
GOA Databaseglycine hydroxymethyltransferase activity
GO:0004372
IBA
Gene Ontologyglycine hydroxymethyltransferase activity1
GO:0004372
IEA
InterProglycine hydroxymethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0070905
IBA
Gene Ontologyserine binding1
GO:0008270
IBA
Gene Ontologyzinc ion binding1
GO:0050897
IBA
Gene Ontologycobalt ion binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005634
IDA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039429 Serine hydroxymethyltransferase-like domain
IPR015424 Pyridoxal phosphate-dependent transferase
IPR001085 Serine hydroxymethyltransferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
Mapman id Description
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM)
4.1.4.3.1 Amino acid metabolism.biosynthesis.serine family.glycine.serine hydroxymethyltransferase (SHM)