Gene: Sopen01g041280

General Information

Structural Information

Species Solanum pennellii
Gene Identifier Sopen01g041280
Transcript Identifier Sopen01g041280.1
Gene Type Coding gene
Location Spenn-ch01 : 98779127-98781765 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000001
#Genes/#Species 35287/100
Phylogenetic origin

ID ORTHO05D000003
#Genes/#Species 15137/100
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Sopen01g041280.1

Descriptions

Short descriptions
Ortholog descriptions

Description embryo defective 2261 (EMB2261) | INVOLVED IN: embryo development ending in seed dormancy | LOCATED IN: chloroplast | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT3G49170

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT3G49170

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR032867	DYW domain

Mapman id	Description
16.11.3.3.4.55	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (ECD1)